YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LSPA_HAEIN
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKKSGLSFL WLSAVAFVID LLTKYIVVQK FDLYESVNVL PVFNLTYVRN YGAAFSFLAD  60
   61 HSGWQQYFFI LLALAISGML VYFLAKNNAE QKIQNSAYAL IIGGALANMV DRAYNGFVVD 120
  121 FFDFYWDIYH YPVFNIADIA ICIGAGLLVL DAFKSEKKKV QDKQVEKCGQ K

Type	Start	End	Confidence
Cytoplasmic	1	6	0.91
Transmembrane Helix	7	28	0.87
Non-Cytoplasmic	29	63	0.96
Transmembrane Helix	64	85	0.92
Cytoplasmic	86	94	0.89
Transmembrane Helix	95	114	0.90
Non-Cytoplasmic	115	130	0.86
Transmembrane Helix	131	153	0.87
Cytoplasmic	154	171	0.99