YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LPXK_PASMU
Protein type:	Transmembrane
Type Confidence:	0.71
Topology Confidence:	0.31
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQFWYSRTWI TWLMLPLSFL FWLISTCRQF LFRKGIFASY RAPVPVIVVG NLSVGGNGKT  60
   61 PVVIWLVKQL QQKGLKVGVI SRGYGSQSSV YPLLVTPDTD PIQGGDEPVL IAKRTQVPVC 120
  121 ISANRQHAIE LLLQHQPDCD LIISDDGLQH YRLQRDFEIV VLDVQRGFGN GFLLPAGPLR 180
  181 ELPSRLNTVD LIICHGQASK YSDVEMTLVP HHAINLVTGE SRLLSDFHRV SAIAGIGHPQ 240
  241 RFFSMLENLS MQLIQTKAFQ DHQTFEAAQF VDFDQTQPLL MTEKDAVKCL SFAQKNWWYV 300
  301 PVEAEIKGEK VRSFLAKFDE IRKTV

Type	Start	End	Confidence
Cytoplasmic	1	7	0.31
Transmembrane Helix	8	30	0.60
Non-Cytoplasmic	31	325	0.73