YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LPXK_GEOSL
Protein type:	Transmembrane
Type Confidence:	0.80
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSCTGFWRKL ASGEECGAAA RLLGAVLAIP AALYGLVVRL RALAYARGLS TVRHLDRPVI  60
   61 SVGNLTVGGT GKTPMVAYLA RRLMARGKRV AVISRGYGGS LEGETRIVSD GRTIVLSAAE 120
  121 AGDEPVHLAT SVPGLMTVIG TDRYTAGLLA LEQLDPDVFI LDDGYQHLRL HRDLNILLMD 180
  181 CNRPLGNGRT LPAGLLREPQ TAVRRADLVV YTRCTGGKAP AVHGMIPSCR AGHALTGAAL 240
  241 LPDGEVQPLA ALRGLRGVAC AGIAEPEGFF DALRREGLDI VAAIPFADHA SYGEREVSTL 300
  301 REAAAGADYL ITTGKDGVKL SAHLARLLPV YATVLEMRPL DPAPLEAALD KVL

Type	Start	End	Confidence
Cytoplasmic	1	16	0.61
Transmembrane Helix	17	38	0.73
Non-Cytoplasmic	39	353	0.63