YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LPXK_COXBU
Protein type:	Transmembrane
Type Confidence:	0.82
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKAPRFWYQ PRSLLGGILS PFSFLYQIIV RIRRGLYAVG LKKISKFPVP IVIVGNITVG  60
   61 GSGKTPFVIW LANELKNRGF RPGVVSRGYG GKANRFPQTV TENSDPLQVG DEAVLLMKKI 120
  121 DCPMVVCRDR GAAVKHLLRN FQCDVVIGDD GLQHYSLGRD LEIALLDDRH LGNGRCLPAG 180
  181 PLREPKSRLN TVDFVVPKQL RPNEIYQLKN PAKKIDFNEL KELTVHAVAG IGNPGYFFKQ 240
  241 LETLGANVIA HPFRDHYFYR SEDFNFDDDH LIILTEKDAI KCKQFDDERL FCFSVDAVVP 300
  301 DQFQNDFFRL ISNIILRKQA QREGI

Type	Start	End	Confidence
Cytoplasmic	1	7	0.40
Transmembrane Helix	8	30	0.69
Non-Cytoplasmic	31	325	0.74