YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PLPP1_CAVPO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDKARLPYV ALDVLCVVLA GLPFAILTSR HTPFQRGIFC NDESIKYPYK EDTIPYALLG  60
   61 GIMIPFSIVV MIIGETLSVY CNLLHSNSFI RNNYIATIYK SIGTFLFGAA ASQSLTDIAK 120
  121 YSIGRLRPHF LSVCDPDWSK VNCSDGYIEY YVCRGNAEKV KEGRLSFYSG HSSFSMYCMV 180
  181 FVALYLQARM KGDWARLLRP TLQFGLVAAS IYVGLSRISD YKHHWSDVLT GLIQGAIVAI 240
  241 LVAVYVSDFF KARNSPFQER KEEDSHTTLH ETPTAGNHYR SNHQP

Type	Start	End	Confidence
Cytoplasmic	1	8	0.85
Transmembrane Helix	9	28	0.95
Non-Cytoplasmic	29	56	0.89
Transmembrane Helix	57	81	0.82
Cytoplasmic	82	95	0.75
Transmembrane Helix	96	116	0.72
Non-Cytoplasmic	117	166	0.78
Transmembrane Helix	167	188	0.83
Cytoplasmic	189	196	0.76
Transmembrane Helix	197	218	0.83
Non-Cytoplasmic	219	227	0.72
Transmembrane Helix	228	250	0.87
Cytoplasmic	251	285	0.85