YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29138240, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFASLIERQ RIRLLLALLF GACGTLAFSP YDVWPAAIVS LIGLQALTFN RRPLQSAAIG  60
   61 YCWGLGLFGS GINWVYVSIA QFGGMPGPVN VFLVVLLAAY LSLYTGLFAG ILSRLWPKTN 120
  121 WLRVAIAAPA IWQITEFLRG WVLTGFPWLQ FGYSQVDGPL KGLAPVMGVE AINFLLMMVS 180
  181 GLLALALATR NWRPLAVAVI LFALPFPLRY IQWFTLEPTK ATQVSLVQGD IPQSLKWDEN 240
  241 QLLNTLNIYL NETRPELGKS QIIIWPESAI PDLEINQQPF LRSLDEMLRE KNSTLITGIV 300
  301 DARLNKQNRY DTYNTIITLG KDNPYSYDSP NRYNKNHLVP FGEFVPLESI LRPLAPFFDL 360
  361 PMSSFSRGPY IQPQLHAHDY KLTAAICYEI ILGEQVRDNF RPDTDYLLTI SNDAWFGKSI 420
  421 GPWQHFQMAR MRSLELARPL LRSTNNGITA VIGPQGEIQA MIPQFTRQVL TTKVTPTTGL 480
  481 TPYARTGDWT VWLITVLFGF GALVMSLRQR RK

Type	Start	End	Confidence
Cytoplasmic	1	11	0.90
Transmembrane Helix	12	28	0.96
Non-Cytoplasmic	29	32	0.75
Transmembrane Helix	33	50	0.88
Cytoplasmic	51	58	0.79
Transmembrane Helix	59	80	0.90
Non-Cytoplasmic	81	90	0.77
Transmembrane Helix	91	112	0.91
Cytoplasmic	113	120	0.81
Transmembrane Helix	121	143	0.80
Non-Cytoplasmic	144	162	0.84
Transmembrane Helix	163	187	0.84
Cytoplasmic	188	194	0.74
Transmembrane Helix	195	213	0.85
Non-Cytoplasmic	214	488	0.89
Transmembrane Helix	489	507	0.94
Cytoplasmic	508	512	0.86