YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LNT_COXBU
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSVLALIAG AILPLAFAPF NWFPIAFVSP AILLAVWLRS RPLVAWWRGW LFGFGFFGAG  60
   61 ASWVYVSIHH FGNANVPLAV LITVLFVFVL ALFIAFQGLS FSLFFRKRKA ALTALFAFPA 120
  121 WWVVWEWLRS ILFTGFPWLF LGYSQINSPL KGFGPLFGIY GISLIVAFIS GCIYLLVTSK 180
  181 KLNKKIMCLI LIILPFIVGW VLTFIPWTRP GSESVRVGLV QGNIGQRLKW DPDTLYSTLH 240
  241 TYYSETQKNW DHGIIVWPEA AIPIYPQQVS VFLQALDKEA KQHNTALMTG IPIYHEKTNK 300
  301 VFNGLMVLGD GHGLYLKRHL VPFGESFTSS KICNLLMKYF DIPMSDLSPG PEDQEPTVVK 360
  361 GIPFAPFICY EIAYPTEVLN HLSNKQFIVV VNDDSWFAGT IAPAQQLQIA QMRALETERY 420
  421 LLYSTNTGIT AIISPEGKIV KSAPQNQRLL LTGQIKPVTG KTPLMRWNYY PVVGIIIIFL 480
  481 LLTFL

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.82
Transmembrane Helix	15	38	0.84
Cytoplasmic	39	45	0.89
Transmembrane Helix	46	67	0.90
Non-Cytoplasmic	68	77	0.77
Transmembrane Helix	78	101	0.89
Cytoplasmic	102	111	0.81
Transmembrane Helix	112	133	0.78
Non-Cytoplasmic	134	155	0.79
Transmembrane Helix	156	177	0.95
Cytoplasmic	178	185	0.91
Transmembrane Helix	186	207	0.93
Non-Cytoplasmic	208	466	0.94
Transmembrane Helix	467	484	0.54
Cytoplasmic	485	485	0.48