YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LIVH_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEQFLYFLQ QMFNGVTLGS TYALIAIGYT MVYGIIGMIN FAHGEVYMIG SYVSFMIIAA  60
   61 LMMMGIDTGW LLVAAGFVGA IVIASAYGWS IERVAYRPVR NSKRLIALIS AIGMSIFLQN 120
  121 YVSLTEGSRD VALPSLFNGQ WVVGHSENFS ASITTMQAVI WIVTFLAMLA LTIFIRYSRM 180
  181 GRACRACAED LKMASLLGIN TDRVIALTFV IGAAMAAVAG VLLGQFYGVI NPYIGFMAGM 240
  241 KAFTAAVLGG IGSIPGAMIG GLILGIAEAL SSAYLSTEYK DVVSFALLIL VLLVMPTGIL 300
  301 GRPEVEKV

Type	Start	End	Confidence
Non-Cytoplasmic	1	15	0.84
Transmembrane Helix	16	37	0.88
Cytoplasmic	38	45	0.67
Transmembrane Helix	46	64	0.88
Non-Cytoplasmic	65	70	0.68
Transmembrane Helix	71	91	0.93
Cytoplasmic	92	104	0.88
Transmembrane Helix	105	124	0.92
Non-Cytoplasmic	125	152	0.95
Transmembrane Helix	153	175	0.88
Cytoplasmic	176	203	0.92
Transmembrane Helix	204	226	0.90
Non-Cytoplasmic	227	241	0.85
Transmembrane Helix	242	266	0.88
Cytoplasmic	267	281	0.80
Transmembrane Helix	282	301	0.92
Non-Cytoplasmic	302	308	0.85