YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LGT_VIBPA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQGYLQFPN IDPVLVSIGP VSIRWYGLMY LVGFMFALWL ANRRADKPGS GWTREQVSDL  60
   61 LFAGFLGVVI GGRVGYVIFY NFELFLDDPL YLFKVWTGGM SFHGGLLGVI TAMFWYAHKN 120
  121 GRTFFGVADF VAPLVPFGLG MGRMGNFMNS ELWGRVTDVP WAIVFPNGGP LPRHPSQLYE 180
  181 MLLEGVVLFF ILNWFIKKPR PLGSVSGLFL AGYGTFRFLV EFVREPDAQL GLFGGYISMG 240
  241 QILSMPMIVL GILMMVWAYK RGLYQDKAQV KTK

Type	Start	End	Confidence
Non-Cytoplasmic	1	20	0.95
Transmembrane Helix	21	41	0.94
Cytoplasmic	42	59	0.90
Transmembrane Helix	60	80	0.93
Non-Cytoplasmic	81	94	0.90
Transmembrane Helix	95	117	0.88
Cytoplasmic	118	123	0.87
Transmembrane Helix	124	144	0.91
Non-Cytoplasmic	145	175	0.94
Transmembrane Helix	176	196	0.90
Cytoplasmic	197	201	0.91
Transmembrane Helix	202	220	0.92
Non-Cytoplasmic	221	236	0.82
Transmembrane Helix	237	259	0.89
Cytoplasmic	260	273	0.95