YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LGT_SHEON
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALNFPNIDP VIVKFGPFDI FGQTFEPALR WYGFTYLVGF VAAMWLLNRQ ADRSNGLWSR  60
   61 EQVSDLLFYG FLGVILGGRI GYVLFYHFDY FLASPMYLFK ISEGGMSFHG GLIGVITAMI 120
  121 YITWKQKRTF FAVADMVAPV VPIGLGAGRI GNFINGELWG RVTDVPWAMV FPSGGPEPRH 180
  181 PSQLYQFALE GVALFLLLYW FSKRTKKVGA VSGMFLLGYG IFRVIVETVR QPDAQLGLYW 240
  241 GLMTMGQILS VPMILFGLYL ILRPEGKQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	27	0.98
Transmembrane Helix	28	47	0.94
Cytoplasmic	48	65	0.92
Transmembrane Helix	66	86	0.94
Non-Cytoplasmic	87	104	0.87
Transmembrane Helix	105	124	0.93
Cytoplasmic	125	130	0.88
Transmembrane Helix	131	151	0.91
Non-Cytoplasmic	152	181	0.93
Transmembrane Helix	182	201	0.93
Cytoplasmic	202	207	0.90
Transmembrane Helix	208	226	0.94
Non-Cytoplasmic	227	237	0.82
Transmembrane Helix	238	262	0.88
Cytoplasmic	263	268	0.96