YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LGT_NITEU
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVHPQFDPV AISIGPLAVR WYGLMYLLGF SLFILLGRYR IRQQPNGVFT REMLDDALFY  60
   61 GVLGVILGGR LGHVLFYEPG YYLQHPLEIL AIWQGGMSFH GGFLGVAIAM LCLARKYQLS 120
  121 WLAVTDFIAP LVPLGLGAGR IGNFINGELW GRPTDVPWGM IFPYADNLPR HPSQLYEFAL 180
  181 EGLVLFALIW LYSAKPRPLG AVTGMFMIGY GAFRSFCEFF REPDDGFLGI MTLGISMGQW 240
  241 LSLPMIAAGI ALLYWAYRYD GKPEKAARKL PRERKNRD

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.95
Transmembrane Helix	18	37	0.94
Cytoplasmic	38	56	0.89
Transmembrane Helix	57	77	0.92
Non-Cytoplasmic	78	89	0.95
Transmembrane Helix	90	113	0.88
Cytoplasmic	114	120	0.82
Transmembrane Helix	121	141	0.89
Non-Cytoplasmic	142	172	0.90
Transmembrane Helix	173	192	0.89
Cytoplasmic	193	198	0.81
Transmembrane Helix	199	217	0.91
Non-Cytoplasmic	218	236	0.83
Transmembrane Helix	237	258	0.91
Cytoplasmic	259	278	0.95