YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LGT_GEOSL
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQFPHIDPVF FRLGHLEFRW YGLMYILGFI AAYFIVRRAA GRRGLALTQD DVADVIFSLA  60
   61 IGVILGGRLG YILFYNLSYY LSHPLKLFAV WEGGMSFHGG LLGVILAGVY VARQKKIGFP 120
  121 VLADICAPAA PVGLGLGRLG NFINGELYGR VTDVPWGIIF PGGGGVPRHP SQLYEAVLEG 180
  181 PVLFLILMAV GRRERPAGVV FWTFIAFYGL FRFLVEFFRE PDAQLGLLAG PFSMGQLLSF 240
  241 PMFLLGLTMA VLVSRRKVGP

Type	Start	End	Confidence
Non-Cytoplasmic	1	17	0.96
Transmembrane Helix	18	36	0.93
Cytoplasmic	37	54	0.79
Transmembrane Helix	55	75	0.92
Non-Cytoplasmic	76	88	0.90
Transmembrane Helix	89	112	0.85
Cytoplasmic	113	120	0.77
Transmembrane Helix	121	139	0.80
Non-Cytoplasmic	140	170	0.78
Transmembrane Helix	171	190	0.78
Cytoplasmic	191	197	0.84
Transmembrane Helix	198	215	0.96
Non-Cytoplasmic	216	231	0.81
Transmembrane Helix	232	253	0.88
Cytoplasmic	254	260	0.87