YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LGT_COXBU
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLYYPHIDPV AFRLGPLKVH WYGLMYLVGF AMAWGLALYR ARDPKRHWTA QQVGDLIFYG  60
   61 ALGLIIGGRL GYMLFYDFSN FIANPLTLFQ VWRGGMSFHG GLIGVIVTTW IFSRRTHKRW 120
  121 MDVTDFVVPL VPLGLAAGRI GNFINGELWG RVTTVPWGMV FPNAGPLPRH PSQLYEFLLE 180
  181 GVLLFIVIWW FSAKLRPRFA VSSLFLLCYG LFRFTAEFFR QPDPQLGFVA FGWLTRGQEL 240
  241 SLPMIIIGGF ALWWAYRHKE R

Type	Start	End	Confidence
Non-Cytoplasmic	1	18	0.98
Transmembrane Helix	19	39	0.93
Cytoplasmic	40	55	0.83
Transmembrane Helix	56	75	0.92
Non-Cytoplasmic	76	94	0.84
Transmembrane Helix	95	112	0.97
Cytoplasmic	113	122	0.84
Transmembrane Helix	123	143	0.82
Non-Cytoplasmic	144	172	0.85
Transmembrane Helix	173	192	0.93
Cytoplasmic	193	198	0.87
Transmembrane Helix	199	219	0.89
Non-Cytoplasmic	220	236	0.91
Transmembrane Helix	237	256	0.92
Cytoplasmic	257	261	0.91