YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LBR_CHICK
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	201	0.99
Transmembrane Helix	202	225	0.89
Non-Cytoplasmic	226	247	0.93
Transmembrane Helix	248	269	0.88
Cytoplasmic	270	287	0.91
Transmembrane Helix	288	309	0.92
Non-Cytoplasmic	310	316	0.89
Transmembrane Helix	317	338	0.93
Cytoplasmic	339	378	0.98
Transmembrane Helix	379	399	0.73
Non-Cytoplasmic	400	409	0.55
Transmembrane Helix	410	429	0.74
Cytoplasmic	430	443	0.79
Transmembrane Helix	444	465	0.82
Non-Cytoplasmic	466	472	0.80
Transmembrane Helix	473	494	0.94
Cytoplasmic	495	513	0.95
Transmembrane Helix	514	536	0.91
Non-Cytoplasmic	537	549	0.83
Transmembrane Helix	550	572	0.81
Cytoplasmic	573	637	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPNRKYADGE VVMGRWPGSV LYYEVQVTSY DDASHLYTVK YKDGTELALK ESDIRLQSSF  60
   61 KQRKSQSSSS SPSRRSRSRS RSRSPGRPAK GRRRSSSHSR EHKEDKKKII QETSLAPPKP 120
  121 SENNTRRYNG EPDSTERNDT SSKLLEQQKL KPDVEMERVL DQYSLRSRRE EKKKEEIYAE 180
  181 KKIFEAIKTP EKPSSKTKEL EFGGRFGTFM LMFFLPATVL YLVLMCKQDD PSLMNFPPLP 240
  241 ALESLWETKV FGVFLLWFFF QALFYLLPIG KVVEGLPLSN PRKLQYRING FYAFLLTAAA 300
  301 IGTLLYFQFE LHYLYDHFVQ FAVSAAAFSM ALSIYLYIRS LKAPEEDLAP GGNSGYLVYD 360
  361 FFTGHELNPR IGSFDLKYFC ELRPGLIGWV VINLAMLLAE MKIHNQSMPS LSMILVNSFQ 420
  421 LLYVVDALWN EEAVLTTMDI THDGFGFMLA FGDLVWVPFV YSLQAFYLVG HPIAISWPVA 480
  481 AAITILNCIG YYIFRSANSQ KNNFRRNPAD PKLSYLKVIP TATGKGLLVT GWWGFVRHPN 540
  541 YLGDIIMALA WSLPCGFNHI LPYFYVIYFI CLLVHREARD EHHCKKKYGL AWERYCQRVP 600
  601 YTHISLHLLE HSTYLICKLK YTSHLCTWSV CYLGFKH