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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|45445626, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.59
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFIHSYIFY TFSRLFNKYR YTIPIFRKGY RKTLDSTDLY RPLEEQKSDI LGNRLCASWE  60
   61 RELKNDGRSP SLVRALLRVF GWQLGFPGLA IFVVELGLRT LQPIFLVKLI SYFSGEPDAA 120
  121 NAGFYYAVAQ IVISALTVMI LTPTTFGIHH VCFKMRVAMG SMIFRKALRL TKGALGDTTS 180
  181 GHVVNLISND IPRLDSAPYT VHYLWVGPLQ VLVITYLMYQ EIGISAVFGV LFMLLFMPIQ 240
  241 MYLGTRTSAI QLKAAERTDN RIRMVNEIIS AIQVLKMYAW EQPFEQMVTH AREKEMNTIR 300
  301 QGQYIRGFDF ARRIVLSRVA IFLSLVGYVI LGKVFTPEIA FMITAYYNVL LAAMSIYVPS 360
  361 AIIQTAQFLT SIRRVEQFMQ SEELGSSDKS EGPSKDTVPG NPPSNNNEAD LLKSAISIRD 420
  421 LKAKWDPNSP DYTLSGINLE IKPGSVVAVI GLTGSGKSSL IQAILGELKA NSGQLQVNGS 480
  481 LSYTSQESWL FSGTVRQNIL FGQPMDSQRY EEVVKKCALE RDFDLLPLRD NTIVGERGAT 540
  541 LSGGQKARIS LARSVYRKAS IYLLDDPLSA VDASVARHLF DQCVRGHLRG STVVLVTHQE 600
  601 QFLPHVDQIV ILANGQIKAL GDYESLLKTG LITGLGSLSK TDKAKTEEQE PLNLNSPDNK 660
  661 NEVTPIKENS EQTVGGSSSG KEHVERQESG GISLALYRKY FQAGGGLVAF LVMLSSSVLA 720
  721 QVAVTGGDYF LTYWVKKEST AAGHGEMEDM ESKSMDVYKY TLIIILSVIM NLSSSFLLFN 780
  781 IAKKASIRLH NTIFNRVTRA DMHFFSINKH GSILNRFTKD MSQVDEVLPV VLVDVMQIAL 840
  841 WLAGIIIVIA NVNPLLLVPT LMLSVIFYHL RNLYLKTSRD LKRVEAINRS PVYSHLAASL 900
  901 NGLTTIRALD AQRVLEKEFD SYQDAHSSAF FMYISTSQAF GYCMNCICVI YISIITLSFF 960
  961 AFPPGNGADV GLVITQAMGL IDMVQWGVRQ TAELENTMTA VERVVEYESI EPEGMLEAPD1020
 1021 DKKPPKTWPE QGEIIFKELN LRYTPNAKAE NVLKSLSFVI QPREKVGIVG RTGAGKSSLI1080
 1081 NALFRLSYTD GSVLIDTRDT RQMGLHDLRR QISIIPQEPV LFSGTMRYNL DPFDEYSDEK1140
 1141 LWGCLEEVKL KEVVSDLPDG LASKISEGGT NFSVGQRQLV CLARAILREN RILVMDEATA1200
 1201 NVDPQTDGLI QATIRSKFRD CTVLTIAHRL HTIIDSDKVM VMDAGRVVEF GSPYELMTKS1260
 1261 DSKVFHNLVN QSGRASYEGL LKIAQEVRFN 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle