YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KUP_BDEBA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	46	0.97
Transmembrane Helix	47	69	0.89
Non-Cytoplasmic	70	85	0.92
Transmembrane Helix	86	108	0.90
Cytoplasmic	109	140	0.97
Transmembrane Helix	141	164	0.85
Non-Cytoplasmic	165	178	0.74
Transmembrane Helix	179	197	0.93
Cytoplasmic	198	205	0.83
Transmembrane Helix	206	226	0.93
Non-Cytoplasmic	227	251	0.84
Transmembrane Helix	252	274	0.87
Cytoplasmic	275	285	0.89
Transmembrane Helix	286	307	0.92
Non-Cytoplasmic	308	325	0.94
Transmembrane Helix	326	350	0.86
Cytoplasmic	351	374	0.91
Transmembrane Helix	375	397	0.89
Non-Cytoplasmic	398	403	0.91
Transmembrane Helix	404	424	0.95
Cytoplasmic	425	432	0.87
Transmembrane Helix	433	455	0.89
Non-Cytoplasmic	456	462	0.79
Transmembrane Helix	463	481	0.96
Cytoplasmic	482	669	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWARCVNLAW GLLTSRMNLT RLKPCFDNLD GVFGIENSGH HKNSSNVLML ALGALGVVFG  60
   61 DIGTSPLYAL KECFGHYGLA PTPENVIGIL SLIFWTLVLA ICIKYMAFVL RADNKGEGGI 120
  121 LSLMALAVRS QQSKDVSRRR WTMTIIGLFG AALLYGDGII TPAISVLSAM EGLTLVAPQF 180
  181 SPYIIPLTIF VMNALFLMQK YGTARIGVIF GPILLIWFTV LGLLGIRGMA KNLHVFEALL 240
  241 PHHGIEFLMN NGMAGFLVLG SVFLVVTGGE ALYADMGHFG KRPIRLAWFF VALPALVLNY 300
  301 FGQGALLLNN PEAVSNPFYM LAPKWALLPM VMLSTMATVI ASQALITGVF SITRQAIQLG 360
  361 FCPRVNIIHT SSQEIGQIYI PIVNWSMFIG VIWLVLTFKT SSNLAAAYGI AVTGATMITT 420
  421 ILAFEVARQK WKWSLLKSSA IFGSFLVMDL AFFGANVHKI PHGGWVPLVI GAIIYLLMTT 480
  481 WQKGRQILFR RLKERSMPIE DFCQKLLREP PLRAPGTAIY MAGDPWGVPA PLLHNMKHNK 540
  541 VLHQRVAILT IQTKEVPFVS KRDRISIQEV IPNIYRIIAN YGFMEIPKMK HILEACRQRD 600
  601 INFNVNETTF VLGRETIIAE KGPNRPGEAG MAHWRERLFA IMSKNAQRPT AFFRIPPNQV 660
  661 IEVGIQVEI