YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KUP2_CHRVO
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.83
Transmembrane Helix	9	30	0.79
Non-Cytoplasmic	31	47	0.93
Transmembrane Helix	48	70	0.91
Cytoplasmic	71	98	0.92
Transmembrane Helix	99	119	0.89
Non-Cytoplasmic	120	136	0.83
Transmembrane Helix	137	156	0.92
Cytoplasmic	157	165	0.79
Transmembrane Helix	166	188	0.91
Non-Cytoplasmic	189	208	0.94
Transmembrane Helix	209	232	0.88
Cytoplasmic	233	244	0.90
Transmembrane Helix	245	265	0.91
Non-Cytoplasmic	266	283	0.88
Transmembrane Helix	284	305	0.91
Cytoplasmic	306	335	0.88
Transmembrane Helix	336	356	0.92
Non-Cytoplasmic	357	362	0.85
Transmembrane Helix	363	384	0.95
Cytoplasmic	385	392	0.81
Transmembrane Helix	393	413	0.94
Non-Cytoplasmic	414	420	0.83
Transmembrane Helix	421	439	0.96
Cytoplasmic	440	621	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQDHNKKAMA GLTLAALGVV YGDIGTSPLY TLRECFVSQN LPTTPDNIFG ILSLIFWSLI  60
   61 FVVSVKYVAF VLRADNRGEG GIMALMALAR HYTTHAARWK IVLLGLFGAA LFYGDAIITP 120
  121 AVSVLSAAEG MEVVSSGMEA YVLPMAVGVL VGLFLLQRHG TARVGLMFGP VMMVWFAILG 180
  181 ILGLHQIIQQ PAVLQALNPW HAVTFLSQHG FHAFLTLGSV VLALTGAEAL YADMGHFGKT 240
  241 PIRRAWFSLV LPGLGLNYFG QGALLMSNPA AIKNPFFLLA PDWALLPMIA LATLATVIAS 300
  301 QAVISGAYSL TRQAILLGYC PRLEVHHTSD KEIGQIYMPF INWALLVAVL VVVLTFKNSS 360
  361 SLAAAYGIAV TGTMLITTML FFVVARVNWR WPLPLALGIT LLFGVIDTAF FAANVHKVAD 420
  421 GGWLPLVMGM AIFTLMSTWK QGRDILFKRL REQALPLDDF IHNLEAYPPA RVEGTAVFLT 480
  481 STLHGVPHAL LHNLKHNKVL HERVVLMTVR TEDIPYVPED ERLEIVQMSA SFWRVMARYG 540
  541 FKEEPNVVEV LDKCAKEGFE MELMDTSFFL SRETIVSTGH PGMARWRQKI FLWMSKNALR 600
  601 ATDFFQVPTN RVVELGAQVE L