YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KUP1_GEOSL
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.79
Transmembrane Helix	16	37	0.80
Non-Cytoplasmic	38	54	0.94
Transmembrane Helix	55	77	0.91
Cytoplasmic	78	108	0.97
Transmembrane Helix	109	131	0.88
Non-Cytoplasmic	132	145	0.83
Transmembrane Helix	146	165	0.95
Cytoplasmic	166	174	0.82
Transmembrane Helix	175	198	0.88
Non-Cytoplasmic	199	219	0.92
Transmembrane Helix	220	241	0.90
Cytoplasmic	242	250	0.87
Transmembrane Helix	251	274	0.85
Non-Cytoplasmic	275	296	0.88
Transmembrane Helix	297	321	0.90
Cytoplasmic	322	341	0.95
Transmembrane Helix	342	364	0.92
Non-Cytoplasmic	365	370	0.82
Transmembrane Helix	371	393	0.91
Cytoplasmic	394	399	0.83
Transmembrane Helix	400	420	0.92
Non-Cytoplasmic	421	427	0.74
Transmembrane Helix	428	448	0.92
Cytoplasmic	449	631	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKNGTVHTG TVRQSLGLSL AALGVVYGDI GTSPLYAMRE CFHGTHPHPA TPDNVLGVLS  60
   61 LIVWALILIV SLKYLVFVLR ADNRGEGGIL ALTALLNPWG DENRPPRKVL VFLGLFGAAL 120
  121 LYGDGTLTPA ISVLSAIEGL KIATPLFHPY IVPITVVILI LLFLIQHRGT ARVGALFGPV 180
  181 MVLWFTVLAL LGIRGIMMAP EVLGALNPLH AVLFFVRDGW SGFQVLGAVF LVVTGGEALY 240
  241 ADMGHFGRLP IRLAWFCCVL PALLLNYFGQ GALLLSDPSE ATEPFYHLAP PWALYPLVLL 300
  301 ATLATIIASQ AVISGVFSLT RQAIQLRLSP RMRIVQTSSE EIGQIYIPAV NWALMLATIT 360
  361 LVAGFGSSSG LAAAYGVAVA TTMVITALLV RFVMLERWHW HPLAVAGLTV VFLTVDLAFF 420
  421 GANILKVGAG GWIPLAAGLA VFTVMITWRR GRELVTTHLL AQATPLPSFL EELAAKPPQR 480
  481 VPGTAVFMSG RLFPAPPTLI HHLEHNKVLH EQVVILTVLT EDIPRVSASE RIELKRLGQG 540
  541 FYRLIVRYGF MQSPNVPVIL RECEPLGLVT DPETTTFYLG RETLIPTEKV SGMPHWREKL 600
  601 FAFMSRNSLQ ATAFYNLPPD RVVELGQQVE I