YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KSG5_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASVGTLPAS SMATKQSNAS ICAEKLPEGI NEMKIKDDKE MEAAVVDGNG TETGHIIVTT  60
   61 IGGKNGQPKQ TISYMAERIV GQGSFGIVFQ AKCLETGETV AIKKVLQDKR YKNRELQTMR 120
  121 LLDHPNVVSL KHCFFSTTEK DELYLNLVLE YVPETVYRVS KHYSRANQRM PIIYVKLYTY 180
  181 QICRALAYIH GGVGVCHRDI KPQNLLVNPH THQVKLCDFG SAKVLVKGEP NISYICSRYY 240
  241 RAPELIFGAT EYTTTIDIWS AGCVLAELLL GQPLFPGESG VDQLVEIIKV LGTPTREEIK 300
  301 CMNPNYTEFK FPQIKAHPWH KIFHKRTPPE AVDLVSRLLQ YSPNLRSTAM EAIVHPFFDE 360
  361 LRDPNTRLPN GRALPPLFNF KPQELKGASL ELLSKLIPDH ARKQCSFLAL

Type	Start	End	Confidence
Signal Peptide	1	19	0.62
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	410	0.99