YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MNT1_CANAL
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASTRSNARL IRFGIFALVL IGCGYILTRG SSFQPPNYQQ TQSPAAHEKQ TGNVAAGGGA  60
   61 GSGSAGAQVP LGKNRGPIPK AIMGAGEGGS DAPVPQQDIP DSYTLNDKIK ATFVTLARNS 120
  121 DLYSLAESIR HVEDRFNKKF HYDWVFLNDE EFNDEFKETV GSLVSGNTKF GLIPKEHWSY 180
  181 PPWIDQEKAA LVREQMREKK IIYGHSESYR HMCRFESGFF WRQEILNDYD YYWRVEPDIK 240
  241 LYCDIDYDIF KWMKDNNKDY AFTISLPEYK ETIPTLWDTT KEFIEKNPQY LAQNNLMDWV 300
  301 SDDKGQTYNG CHFWSNFEIG SLAFWRSEAY RKYFEHLDKA GGFFYERWGD APVHSIAAAL 360
  361 FLPREKIHFF EDVGYYHVPF TNCPVDKEVR KARNCNCDPN KDFTWRGYSC TTKYYTLNNF 420
  421 KRQKGWEKYT A

Type	Start	End	Confidence
Cytoplasmic	1	9	0.88
Transmembrane Helix	10	28	0.90
Non-Cytoplasmic	29	431	0.98