YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|551633, gi\|541316
Protein type:	Globular with Signal Peptide
Type Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRSATLPFA SALPSLPDNH RLRLFSGSSN SALSQEVSRY LGIDLGPMIR KRFADGELYV  60
   61 QIQESIRGCD VYLMQPTCWP VNDHLMELLI MIDACRRASA RQITAVLPYY GYARADRKTA 120
  121 GRESITAKLV ANLITQAGAN RVLAMDLHSA QIQGYFDIPF DHVYGSPVLI DYLRSKNLAD 180
  181 LVVVSPDVGG VARARAFAKK LDDAPLAIID KRRQAHNVAE VLNVIGDVQG KTAVLVDDMI 240
  241 DTAGTICEGA RLLRKQGASQ VYACATHAVF SPPAIERLSA SGLFEEVIVT NTIPIPEENR 300
  301 FPQLTILSVA NLLGETIWRI HEESSVSSMF R

Type	Start	End	Confidence
Signal Peptide	1	17	0.85
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	331	0.99