YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KHT2_KLULC
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	57	0.99
Transmembrane Helix	58	78	0.94
Non-Cytoplasmic	79	111	0.94
Transmembrane Helix	112	131	0.94
Cytoplasmic	132	140	0.80
Transmembrane Helix	141	161	0.94
Non-Cytoplasmic	162	167	0.89
Transmembrane Helix	168	189	0.94
Cytoplasmic	190	200	0.82
Transmembrane Helix	201	219	0.94
Non-Cytoplasmic	220	233	0.77
Transmembrane Helix	234	253	0.94
Cytoplasmic	254	317	0.97
Transmembrane Helix	318	336	0.84
Non-Cytoplasmic	337	356	0.79
Transmembrane Helix	357	378	0.91
Cytoplasmic	379	385	0.93
Transmembrane Helix	386	407	0.94
Non-Cytoplasmic	408	427	0.87
Transmembrane Helix	428	451	0.90
Cytoplasmic	452	462	0.85
Transmembrane Helix	463	482	0.89
Non-Cytoplasmic	483	490	0.66
Transmembrane Helix	491	511	0.94
Cytoplasmic	512	566	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSELETGTAA HGTPVENKSV SSSQASTPTN VGSRDDLKVD DDNHSVDAIE LPKKPRSAYI  60
   61 TVSILCLMVA FGGFVFGWDT GTISGFVNQT DFIRRFGQEK ADGSHYLSNV RTGLIVSIFN 120
  121 IGCAIGGIIL SKLGDMYGRR IGLMIVVLIY VVGIIIQIAS IDKWYQYFIG RIISGLGVGG 180
  181 ISVLSPMLIS ETAPKHIRGT LVSFYQLMIT FGIFLGYCTN YGTKTYSNSV QWRVPLGLCF 240
  241 AWAIFMITGM LFVPESPRFL VEKDRIDEAK RSIAKSNKVS YEDPAVQAEV DLICAGVEAE 300
  301 RLAGSASIKE LFSTKTKVFQ RLIMGMLIQS FQQLTGNNYF FYYGTTIFNS VGMDDSFETS 360
  361 IVLGIVNFAS TFVAIYVVDK FGRRKCLLWG AAAMTACMVV FASVGVTRLW PDGANHPETA 420
  421 SKGAGNCMIV FACFYIFCFA TSWAPIAYVV VAESYPLRVK AKCMAIATAS NWIWGFLNGF 480
  481 FTPFITSAIH FYYGYVFMGC LVAMFFYVFF FVPETKGLTL EEVQEMWEEG VLPWKSSSWV 540
  541 PSSRRNAGYD VDALQHDEKP WYKAML