YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KGTP_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.97
Transmembrane Helix	21	41	0.82
Non-Cytoplasmic	42	61	0.75
Transmembrane Helix	62	84	0.87
Cytoplasmic	85	95	0.90
Transmembrane Helix	96	116	0.93
Non-Cytoplasmic	117	124	0.67
Transmembrane Helix	125	145	0.85
Cytoplasmic	146	163	0.79
Transmembrane Helix	164	185	0.90
Non-Cytoplasmic	186	194	0.88
Transmembrane Helix	195	214	0.93
Cytoplasmic	215	243	0.94
Transmembrane Helix	244	264	0.95
Non-Cytoplasmic	265	277	0.81
Transmembrane Helix	278	300	0.86
Cytoplasmic	301	309	0.85
Transmembrane Helix	310	330	0.92
Non-Cytoplasmic	331	336	0.84
Transmembrane Helix	337	360	0.88
Cytoplasmic	361	370	0.83
Transmembrane Helix	371	393	0.85
Non-Cytoplasmic	394	403	0.88
Transmembrane Helix	404	424	0.95
Cytoplasmic	425	432	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAESTVTADS KLTSSDTRRR IWAIVGASSG NLVEWFDFYV YSFCSLYFAH IFFPSGNTTT  60
   61 QLLQTAGVFA AGFLMRPIGG WLFGRIADKH GRKKSMLLSV CMMCFGSLVI ACLPGYETIG 120
  121 TWAPALLLLA RLFQGLSVGG EYGTSATYMS EVAVEGRKGF YASFQYVTLI GGQLLALLVV 180
  181 VVLQHTMEDA ALREWGWRIP FALGAVLAVV ALWLRRQLDE TSQQETRALK EAGSLKGLWR 240
  241 NRRAFIMVLG FTAAGSLCFY TFTTYMQKYL VNTAGMHANV ASGIMTAALF VFMLIQPLIG 300
  301 ALSDKIGRRT SMLCFGSLAA IFTVPILSAL QNVSSPYAAF GLVMCALLIV SFYTSISGIL 360
  361 KAEMFPAQVR ALGVGLSYAV ANAIFGGSAE YVALSLKSIG METAFFWYVT LMAVVAFLVS 420
  421 LMLHRKGKGM RL