YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KEFC_SHIFL
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.79
Transmembrane Helix	12	44	0.70
Non-Cytoplasmic	45	53	0.80
Transmembrane Helix	54	74	0.91
Cytoplasmic	75	83	0.88
Transmembrane Helix	84	107	0.89
Non-Cytoplasmic	108	113	0.70
Transmembrane Helix	114	134	0.89
Cytoplasmic	135	148	0.88
Transmembrane Helix	149	171	0.90
Non-Cytoplasmic	172	178	0.81
Transmembrane Helix	179	202	0.88
Cytoplasmic	203	213	0.89
Transmembrane Helix	214	234	0.90
Non-Cytoplasmic	235	238	0.82
Transmembrane Helix	239	260	0.85
Cytoplasmic	261	267	0.89
Transmembrane Helix	268	289	0.90
Non-Cytoplasmic	290	295	0.79
Transmembrane Helix	296	315	0.96
Cytoplasmic	316	326	0.89
Transmembrane Helix	327	349	0.90
Non-Cytoplasmic	350	358	0.79
Transmembrane Helix	359	378	0.93
Cytoplasmic	379	620	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSHTLVQAL IYLGSAALIV PIAVRLGLGS VLGYLIAGCI IGPWGLRLVT DAESILHFAE  60
   61 IGVVLMLFII GLELDPQRLW KLRAAVFGGG ALQMVICGGL LGLFCMLLGL RWQVAELIGM 120
  121 TLALSSTAIA MQAMNERNLM VTQMGRSAFA VLLFQDIAAI PLVAMIPLLA ASSASTTMGA 180
  181 FALSALKVAG ALVLVVLLGR YVTRPALRFV ARSGLREVFS AVALFLVFGF GLLLEEVGLS 240
  241 MAMGAFLAGV LLASSEYRHA LESDIEPFKG LLLGLFFIGV GMSIDFGTLI ENPLRIVILL 300
  301 LGFLIIKIAM LWLIARPLQV PNKQRRWFAV LLGQGSEFAF VVFGAAQMAN VLEPEWAKSL 360
  361 TLAVALSMAA TPILLVILNR LEQSSTEEAR EADEIDEEQP RVIIAGFGRF GQITGRLLLS 420
  421 SGVKMVVLDH DPDHIETLRK FGMKVFYGDA TRMDLLESAG AAKAEVLINA IDDPQTNLQL 480
  481 TEMVKEHFPH LQIIARARDV DHYIRLRQAG VEKPERETFE GALKTGRLAL ESLGLGPYEA 540
  541 RERADVFRRF NIQMVEEMAM VENDTKARAA VYKRTSAMLS EIITEDREHL SLIQRHGWQG 600
  601 TEEGKHTGNM ADEPETKPSS