YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KCH_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.32
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHWATFKQT ATNLWVTLRH DILALAVFLN GLLIFKTIYG MSVNLLDIFH IKAFSELDLS  60
   61 LLANAPLFML GVFLVLNSIG LLFRAKLAWA ISIILLLIAL IYTLHFYPWL KFSIGFCIFT 120
  121 LVFLLILRKD FSHSSAAAGT IFAFISFTTL LFYSTYGALY LSEGFNPRIE SLMTAFYFSI 180
  181 ETMSTVGYGD IVPVSESARL FTISVIISGI TVFATSMTSI FGPLIRGGFN KLVKGNNHTM 240
  241 HRKDHFIVCG HSILAINTIL QLNQRGQNVT VISNLPEDDI KQLEQRLGDN ADVIPGDSND 300
  301 SSVLKKAGID RCRAILALSD NDADNAFVVL SAKDMSSDVK TVLAVSDSKN LNKIKMVHPD 360
  361 IILSPQLFGS EILARVLNGE EINNDMLVSM LLNSGHGIFS DNDELETKAD SKESAQK

Type	Start	End	Confidence
Cytoplasmic	1	20	0.88
Transmembrane Helix	21	40	0.93
Non-Cytoplasmic	41	58	0.87
Transmembrane Helix	59	80	0.88
Cytoplasmic	81	86	0.73
Transmembrane Helix	87	105	0.92
Non-Cytoplasmic	106	109	0.71
Transmembrane Helix	110	127	0.92
Cytoplasmic	128	135	0.78
Transmembrane Helix	136	157	0.90
Non-Cytoplasmic	158	199	0.65
Transmembrane Helix	200	225	0.84
Cytoplasmic	226	244	0.55
Transmembrane Helix	245	260	0.32
Non-Cytoplasmic	261	417	0.64