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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: KCNH2_CANLF
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.51
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVRRGHVAP QNTFLDTIIR KFEGQSRKFI IANARVENCA VIYCNDGFCE LCGYSRAEVM  60
   61 QRPCTCDFLH GPRTQRRAAA QIAQALLGAE ERKVEIAFYR KDGSCFLCLV DVVPVKNEDG 120
  121 AVIMFILNFE VVMEKDMVGS PTHDTNHRGP PTSWLAPGRA KTFRLKLPAL LALTTRESSA 180
  181 RPGGVGSAGA PGAVVVDVDL SPAVPSRESL ALDEVTAMDN HVAGLGPMEE QRALVGSSSP 240
  241 PAGAPEPLPS PRAHSLNPDA SGSSCSLART RSRESCASVR RASSADDIEA MRAGLPPPPR 300
  301 HASTGAMHPL RGGLLNSTSD SDLVRYRTIS KIPQITLNFV DLKGDPFLAS PTSDREIIAP 360
  361 KIKERTHNVT EKVTQVLSLG ADVLPEYKLQ APRIHRWTIL HYSPFKAVWD WLILLLVIYT 420
  421 AVFTPYSAAF LLKETEEGPP APDCGYACQP LAVVDFIVDI MFIVDILINF RTTYVNANEE 480
  481 VVSHPGRIAV HYFKGWFLID MVAAIPFDLL IFGSGSEELI GLLKTARLLR LVRVARKLDR 540
  541 YSEYGAAVLF LLMCTFALIA HWLACIWYAI GNMEQPHMDS RIGWLHNLGD QIGKPYNSSG 600
  601 LGGPSIKDKY VTALYFTFSS LTSVGFGNVS PNTNSEKIFS ICVMLIGSLM YASIFGNVSA 660
  661 IIQRLYSGTA RYHTQMLRVR EFIRFHQIPN PLRQRLEEYF QHAWSYTNGI DMNAVLKGFP 720
  721 ECLQADICLH LNRSLLQHCK PFRGATKGCL RALAMKFKTT HAPPGDTLVH AGDLLTALYF 780
  781 ISRGSIEILR GDVVVAILGK NDIFGEPLNL YARPGKSNGD VRALTYCDLH KIHRDDLLEV 840
  841 LDMYPEFSDH FWSSLEITFN LRDTNMIPGS PGSAELEGGF NRQRKRKLSF RRRTDRDPEQ 900
  901 PGEVSALGPG RAGAGPSGRG RPGGPWGESP SSGPSSPESS EDEGPGRSSS PLRLVPFSSP 960
  961 RPPGEPPGGE PLTEDGEKSS DTCNPLSGAF SGVSNIFSFW GDSRGHQYQE LPRCPAPTPS1020
 1021 LLNIPLSSPC RRPRGDVEGR LDALQRQLNR LETRLSADMA TVLQLLQRQM TLIPPAYSAV1080
 1081 TTPGPGPTST SSLLPVSPIP TLTLDSLSQV SQFMAFEELP PGAPELPQDG PPRRLSLPGQ1140
 1141 LGALTSQPLH RHGSDPGS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle