YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KCND3_RAT
Protein type:	Transmembrane
Type Confidence:	0.87
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAGVAAWLP FARAAAIGWM PVANCPMPLA PADKNKRQDE LIVLNVSGRR FQTWRTTLER  60
   61 YPDTLLGSTE KEFFFNEDTK EYFFDRDPEV FRCVLNFYRT GKLHYPRYEC ISAYDDELAF 120
  121 YGILPEIIGD CCYEEYKDRK RENAERLMDD NESENNQESM PSLSFRQTMW RAFENPHTST 180
  181 LALVFYYVTG FFIAVSVITN VVETVPCGTV PGSKELPCGE RYSVAFFCLD TACVMIFTVE 240
  241 YLLRLFAAPS RYRFIRSVMS IIDVVAIMPY YIGLVMTNNE DVSGAFVTLR VFRVFRIFKF 300
  301 SRHSQGLRIL GYTLKSCASE LGFLLFSLTM AIIIFATVMF YAEKGSSASK FTSIPASFWY 360
  361 TIVTMTTLGY GDMVPKTIAG KIFGSICSLS GVLVIALPVP VIVSNFSRIY HQNQRADKRR 420
  421 AQKKARLARI RVAKTGSSNA YLHSKRNGLL NEALELTGTP EEEHMGKTTS LIESQHHHLL 480
  481 HCLEKTTGLS YLVDDPLLSV RTSTIKNHEF IDEQMFEQNC MESSMQNYPS TRSPSLSSHS 540
  541 GLTTTCCSRR SKKTTHLPNS NLPATRLRSM QELSTIHIQG SEQPSLTTSR SSLNLKADDG 600
  601 LRPNCKTSQI TTAIISIPTP PALTPEGESR PPPASPGPNT NIPSITSNVV KVSVL

Type	Start	End	Confidence
Cytoplasmic	1	178	0.80
Transmembrane Helix	179	202	0.77
Non-Cytoplasmic	203	221	0.89
Transmembrane Helix	222	243	0.87
Cytoplasmic	244	253	0.80
Transmembrane Helix	254	274	0.90
Non-Cytoplasmic	275	281	0.82
Transmembrane Helix	282	300	0.68
Cytoplasmic	301	320	0.70
Transmembrane Helix	321	342	0.92
Non-Cytoplasmic	343	350	0.69
Transmembrane Helix	351	371	0.84
Cytoplasmic	372	381	0.60
Transmembrane Helix	382	403	0.91
Non-Cytoplasmic	404	655	0.79