YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KCND2_RAT
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAGVAAWLP FARAAAIGWM PVASGPMPAP PRQERKRTQD ALIVLNVSGT RFQTWQDTLE  60
   61 RYPDTLLGSS ERDFFYHPET QQYFFDRDPD IFRHILNFYR TGKLHYPRHE CISAYDEELA 120
  121 FFGLIPEIIG DCCYEEYKDR RRENAERLQD DADTDNTGES ALPTMTARQR VWRAFENPHT 180
  181 STMALVFYYV TGFFIAVSVI ANVVETVPCG SSPGHIKELP CGERYAVAFF CLDTACVMIF 240
  241 TVEYLLRLAA APSRYRFVRS VMSIIDVVAI LPYYIGLVMT DNEDVSGAFV TLRVFRVFRI 300
  301 FKFSRHSQGL RILGYTLKSC ASELGFLLFS LTMAIIIFAT VMFYAEKGSS ASKFTSIPAA 360
  361 FWYTIVTMTT LGYGDMVPKT IAGKIFGSIC SLSGVLVIAL PVPVIVSNFS RIYHQNQRAD 420
  421 KRRAQKKARL ARIRAAKSGS ANAYMQSKRN GLLSNQLQSS EDEPAFVSKS GSSFETQHHH 480
  481 LLHCLEKTTN HEFVDEQVFE ESCMEVATVN RPSSHSPSLS SQQGVTSTCC SRRHKKSFRI 540
  541 PNANVSGSHR GSVQELSTIQ IRCVERTPLS NSRSSLNAKM EECVKLNCEQ PYVTTAIISI 600
  601 PTPPVTTPEG DDRPESPEYS GGNIVRVSAL

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.59
Transmembrane Helix	7	27	0.59
Cytoplasmic	28	181	0.93
Transmembrane Helix	182	204	0.85
Non-Cytoplasmic	205	224	0.90
Transmembrane Helix	225	246	0.91
Cytoplasmic	247	256	0.84
Transmembrane Helix	257	277	0.90
Non-Cytoplasmic	278	284	0.84
Transmembrane Helix	285	303	0.67
Cytoplasmic	304	323	0.69
Transmembrane Helix	324	345	0.92
Non-Cytoplasmic	346	353	0.68
Transmembrane Helix	354	374	0.86
Cytoplasmic	375	384	0.58
Transmembrane Helix	385	406	0.91
Non-Cytoplasmic	407	630	0.77