YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|167424913, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQLLDFLPL VVFFIFYKMY DIFVASGALI VATLVALAFT WLKYRKVEKM TLVTAAMVLV  60
   61 FGTLTLAFHS DLFIKWKVTV LYVLFALALL VSQWVMKKPL IQRMLGKELT LPDKVWSTLN 120
  121 LSWAIFFLVC GLLNIYVAFW LPQDIWVNFK VFGLTALTLI FTLISGVYIY RHMPEEQKKS 180
  181

Type	Start	End	Confidence
Non-Cytoplasmic	1	19	0.95
Transmembrane Helix	20	42	0.92
Cytoplasmic	43	49	0.93
Transmembrane Helix	50	70	0.93
Non-Cytoplasmic	71	77	0.78
Transmembrane Helix	78	96	0.96
Cytoplasmic	97	115	0.94
Transmembrane Helix	116	140	0.88
Non-Cytoplasmic	141	150	0.79
Transmembrane Helix	151	170	0.96
Cytoplasmic	171	180	0.92