YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YCIB_RALSO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFLFDLFPV ILFFAAFKVA GIYVATTVAM VATVAQIAWV WFKHRKVDAM QWLSLLIIVV  60
   61 FGGATLIFHN DTFIKWKPTV LYWMFGVVLL GSAVLLRKNL IRAMMEQQVS LPEPMWGRLN 120
  121 LVWSLFFLAM GGLNLYVAYH FDTDVWVNFK LFGSMGLMVV FILVQSVWLA RHMQERPAGA 180
  181 NPQDDR

Type	Start	End	Confidence
Non-Cytoplasmic	1	18	0.86
Transmembrane Helix	19	42	0.88
Cytoplasmic	43	49	0.91
Transmembrane Helix	50	69	0.94
Non-Cytoplasmic	70	78	0.83
Transmembrane Helix	79	101	0.89
Cytoplasmic	102	118	0.95
Transmembrane Helix	119	140	0.91
Non-Cytoplasmic	141	148	0.83
Transmembrane Helix	149	169	0.94
Cytoplasmic	170	186	0.96