YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	INDA1_HYPAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	69	0.99
Transmembrane Helix	70	92	0.91
Non-Cytoplasmic	93	102	0.76
Transmembrane Helix	103	126	0.79
Cytoplasmic	127	149	0.65
Transmembrane Helix	150	170	0.76
Non-Cytoplasmic	171	177	0.81
Transmembrane Helix	178	200	0.92
Cytoplasmic	201	208	0.84
Transmembrane Helix	209	230	0.93
Non-Cytoplasmic	231	253	0.94
Transmembrane Helix	254	277	0.86
Cytoplasmic	278	295	0.91
Transmembrane Helix	296	315	0.96
Non-Cytoplasmic	316	353	0.92
Transmembrane Helix	354	375	0.89
Cytoplasmic	376	396	0.90
Transmembrane Helix	397	415	0.94
Non-Cytoplasmic	416	424	0.75
Transmembrane Helix	425	446	0.93
Cytoplasmic	447	466	0.93
Transmembrane Helix	467	491	0.87
Non-Cytoplasmic	492	506	0.94
Transmembrane Helix	507	527	0.91
Cytoplasmic	528	573	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKEESGHVT PEKGDNVVDY QASTTVLPSE GPERDANWFT RNGLNVDSFK KKHYGPGMVE  60
   61 LERPMKARHL HMIAIGGSIG AGFFVGSGGA LAKGGPGSLF VDFLIIGIMM FNVVYALGEL 120
  121 AIMYPVSGSF YTYSARFIDP AWGFAMGWNY VLQWAAVLPL ELTVCGITIS YWNSEITTAA 180
  181 WISLFLGVII IINLFGALGY AEEEFWASCF KLAATVIFMI IAFVLVLGGG PKDGRYHEYW 240
  241 GARYWYDPGA FKNGFKGFCS VFVTAAFSFS GTELVGLAAA ESTNPTKNMP GAIKQVFWRI 300
  301 TIFYILGLFF VGLLINSDDP ALLSSAAYAD SKASPFVLVG KYAGLKGFDH FMNLVILASV 360
  361 LSIGVSGVYG GSRTLTALAQ QGYAPKLFTY IDKSGRPLPS VIFLILFGFI AYVSLDATGP 420
  421 VVFDWLLAIS GLAALFTWGS VCLAHIRFRK AWKYHGHTLD EIPFKAAGGV YGSYLGLFIC 480
  481 VIVLMAQFYT AIAAPPGSPG VGTAEDFFKQ YLAAPVVLGF WIVGWLWKRQ PFLRTKNIDV 540
  541 DTGLREFDWD EINAERTRIA PLPAWRRIIH HTF