YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55662945
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEYAREPCP WRIVDDCGGA FTMGVIGGGV FQAIKGFRNA PVGIRHRLRG SANAVRIRAP  60
   61 QIGGSFAVWG GLFSTIDCGL VRLRGKEDPW NSITSGALTG AVLAARSGPL AMVGSAMMGG 120
  121 ILLALIEGVG ILLTRYTAQQ FRNAPPFLED PSQLPPKDGT PAPGYPSYQQ YH

Type	Start	End	Confidence
Cytoplasmic	1	16	0.54
Transmembrane Helix	17	34	0.74
Non-Cytoplasmic	35	56	0.44
Transmembrane Helix	57	81	0.69
Cytoplasmic	82	89	0.46
Transmembrane Helix	90	108	0.48
Non-Cytoplasmic	109	109	0.49
Transmembrane Helix	110	134	0.80
Cytoplasmic	135	172	0.81