YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	TIM23_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDNSTPPPGG FKGGLGSIFG GGTPEYSNTE LSGVPLTGMS PLSPYLNVDP RYLIQDTDEF  60
   61 ILPTGANKTR GRFELAFFTI GGCCITGAAF GTLNGLRMGL SETRDMPWSK PRNVQILNMV 120
  121 TRQGASWANT LGSVALLYSV FGVAIEKARG AEDDLNTVAA GTLTGMVFKS TGGLKGVARG 180
  181 GLIGLAMSGL YALYNNWDHL KGKSPSHY

Type	Start	End	Confidence
Cytoplasmic	1	74	0.92
Transmembrane Helix	75	96	0.89
Non-Cytoplasmic	97	124	0.87
Transmembrane Helix	125	145	0.78
Cytoplasmic	146	175	0.70
Transmembrane Helix	176	194	0.78
Non-Cytoplasmic	195	208	0.58