YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	IHH_DANRE
Protein type:	Globular with Signal Peptide
Type Confidence:	0.98
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLSTAAALL TGFILAFSPA YDGCGPGRGY GKRRTPRKLT PLAYKQFSPN VAEKTLGASG  60
   61 RYEGKVTPSS ERFKELTPNY NPDIIFKDEE NTGADRMMTQ RCKDKLNSLA ISVMNLWPGV 120
  121 RLRVTEGWDE DGLHSEESLH YEGRAVDITT SDRDRNKYRM LARLAVEAGF DWVYYESKGH 180
  181 VHCSVKSEHS VAAKTGGCFP GRALVTMKDG SHRQIRDLQA GDLVLASEGS DGTGDLIYSE 240
  241 VLTFLDRRPI TQKHFYVIRT EDGASVSLTA AHLLFMRVGN CSNRGEPKPG AVRTIFASDA 300
  301 QVGQCLLLGK LRKRFSQITH VGVREDQGLY PPLTAHGTVV VNDVLTSCYA AVNRQRLAHW 360
  361 AFAPLRLLYS WTGPDQVLKN GLHWYSQVLI GLGKLLLDSE LFHPLALEAT ER

Type	Start	End	Confidence
Signal Peptide	1	20	0.98
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	412	0.99