YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|75229188, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGSMIVNNL AGLMMLTSLF VISVKSYRLS CGFYACQSLV LVSIFATLSC LFAAEQLLIW  60
   61 SASAFITKVL LVPLIMTYAA RNIPQNIPEK ALFGPAMMAL LAALIVLLCA FVVQPVKLPM 120
  121 ATGLKPALAV ALGHFLLGLL CIVSQRNILR QIFGYCLMEN GSHLVLALLA WRAPELVEIG 180
  181 IATDAIFAVI VMVLLARKIW RTHGTLDVNN LTALKG

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.77
Transmembrane Helix	6	24	0.86
Cytoplasmic	25	32	0.70
Transmembrane Helix	33	53	0.91
Non-Cytoplasmic	54	58	0.66
Transmembrane Helix	59	80	0.88
Cytoplasmic	81	90	0.87
Transmembrane Helix	91	114	0.91
Non-Cytoplasmic	115	122	0.78
Transmembrane Helix	123	143	0.92
Cytoplasmic	144	151	0.82
Transmembrane Helix	152	171	0.89
Non-Cytoplasmic	172	178	0.71
Transmembrane Helix	179	196	0.94
Cytoplasmic	197	216	0.87