YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HYFD_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.61
Transmembrane Helix	5	22	0.71
Cytoplasmic	23	29	0.79
Transmembrane Helix	30	52	0.90
Non-Cytoplasmic	53	76	0.81
Transmembrane Helix	77	99	0.88
Cytoplasmic	100	114	0.80
Transmembrane Helix	115	132	0.94
Non-Cytoplasmic	133	138	0.61
Transmembrane Helix	139	156	0.85
Cytoplasmic	157	168	0.76
Transmembrane Helix	169	190	0.86
Non-Cytoplasmic	191	204	0.73
Transmembrane Helix	205	224	0.83
Cytoplasmic	225	240	0.77
Transmembrane Helix	241	262	0.82
Non-Cytoplasmic	263	268	0.84
Transmembrane Helix	269	291	0.91
Cytoplasmic	292	298	0.95
Transmembrane Helix	299	321	0.84
Non-Cytoplasmic	322	335	0.71
Transmembrane Helix	336	356	0.89
Cytoplasmic	357	364	0.84
Transmembrane Helix	365	389	0.84
Non-Cytoplasmic	390	409	0.89
Transmembrane Helix	410	433	0.90
Cytoplasmic	434	455	0.92
Transmembrane Helix	456	478	0.90
Non-Cytoplasmic	479	479	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENLALTTLL LPFIGALVVS FSPQRRAAEW GVLFAALTTL CMLSLISAFY QADKVAVTLT  60
   61 LVNVGDVALF GLVIDRVSTL ILFVVVFLGL LVTIYSTGYL TDKNREHPHN GTNRYYAFLL 120
  121 VFIGAMAGLV LSSTLLGQLL FFEITGGCSW ALISYYQSDK AQRSALKALL ITHIGSLGLY 180
  181 LAAATLFLQT GTFALSAMSE LHGDARYLVY GGILFAAWGK SAQLPMQAWL PDAMEAPTPI 240
  241 SAYLHAASMV KVGVYIFARA IIDGGNIPHV IGGVGMVMAL VTILYGFLMY LPQQDMKRLL 300
  301 AWSTITQLGW MFFGLSLSIF GSRLALEGSI AYIVNHAFAK SLFFLVAGAL SYSCGTRLLP 360
  361 RLRGVLHTLP LPGVGFCVAA LAITGVPPFN GFFSKFPLFA AGFALSVEYW ILLPAMILLM 420
  421 IESVASFAWF IRWFGRVVPG KPSEAVADAA PLPGSMRLVL IVLIVMSLIS SVIAATWLQ