YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HYCC_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.78
Transmembrane Helix	9	30	0.86
Non-Cytoplasmic	31	43	0.70
Transmembrane Helix	44	67	0.86
Cytoplasmic	68	75	0.75
Transmembrane Helix	76	96	0.92
Non-Cytoplasmic	97	113	0.80
Transmembrane Helix	114	144	0.80
Cytoplasmic	145	154	0.81
Transmembrane Helix	155	174	0.96
Non-Cytoplasmic	175	196	0.87
Transmembrane Helix	197	218	0.94
Cytoplasmic	219	228	0.83
Transmembrane Helix	229	251	0.87
Non-Cytoplasmic	252	257	0.80
Transmembrane Helix	258	280	0.94
Cytoplasmic	281	291	0.84
Transmembrane Helix	292	312	0.87
Non-Cytoplasmic	313	328	0.73
Transmembrane Helix	329	351	0.84
Cytoplasmic	352	366	0.88
Transmembrane Helix	367	388	0.88
Non-Cytoplasmic	389	410	0.90
Transmembrane Helix	411	437	0.83
Cytoplasmic	438	455	0.88
Transmembrane Helix	456	479	0.91
Non-Cytoplasmic	480	500	0.89
Transmembrane Helix	501	521	0.95
Cytoplasmic	522	585	0.94
Transmembrane Helix	586	605	0.57
Non-Cytoplasmic	606	608	0.43

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAISLINSG VAWFVAAAVL AFLFSFQKAL SGWIAGIGGA VGSLYTAAAG FTVLTGAVGV  60
   61 SGALSLVSYD VQISPLNAIW LITLGLCGLF VSLYNIDWHR HAQVKCNGLQ INMLMAAAVC 120
  121 AVIASNLGMF VVMAEIMALC AVFLTSNSKE GKLWFALGRL GTLLLAIACW LLWQRYGTLD 180
  181 LRLLDMRMQQ LPLGSDIWLL GVIGFGLLAG IIPLHGWVPQ AHANASAPAA ALFSTVVMKI 240
  241 GLLGILTLSL LGGNAPLWWG IALLVLGMIT AFVGGLYALV EHNIQRLLAY HTLENIGIIL 300
  301 LGLGAGVTGI ALEQPALIAL GLVGGLYHLL NHSLFKSVLF LGAGSVWFRT GHRDIEKLGG 360
  361 IGKKMPVISI AMLVGLMAMA ALPPLNGFAG EWVIYQSFFK LSNSGAFVAR LLGPLLAVGL 420
  421 AITGALAVMC MAKVYGVTFL GAPRTKEAEN ATCAPLLMSV SVVALAICCV IGGVAAPWLL 480
  481 PMLSAAVPLP LEPANTTVSQ PMITLLLIAC PLLPFIIMAI CKGDRLPSRS RGAAWVCGYD 540
  541 HEKSMVITAH GFAMPVKQAF APVLKLRKWL NPVSLVPGWQ CEGSALLFRR MALVELAVLV 600
  601 VIIVSRGA