YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HTPX_RHILO
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTLRTAMLL AAMTALFMGV GFLIGGSGGM MIALLIAAGT NLFSYWNADK MVLSMNRAVE  60
   61 VDEKNAPEYY AIVQALAKQA GLPMPRTYLI DNPQPNAFAT GRNPQNAAVA ASTGLLQRLT 120
  121 HEEVAAVMAH ELAHVQHRDT LTMTIVATFA GAISMLGNFA FFLGGNRDNN PFGFVGVLAA 180
  181 MIVAPFAAMI VQMAVSRTRE YEADRRGAEI CGHPLWLASA LDKIARGAER IPNPDAERNP 240
  241 AMAHLFIINP LHGERMDNLF STHPSTDNRI AALQEMAQQM AGGTQAAPRP TPRQAGEQQP 300
  301 SGPWGQAPQA EQPAEPERPK ANPWGRNPTG PKGRWS

Type	Start	End	Confidence
Cytoplasmic	1	6	0.64
Transmembrane Helix	7	26	0.78
Non-Cytoplasmic	27	28	0.45
Transmembrane Helix	29	48	0.74
Cytoplasmic	49	140	0.83
Transmembrane Helix	141	163	0.91
Non-Cytoplasmic	164	171	0.77
Transmembrane Helix	172	195	0.89
Cytoplasmic	196	336	0.88