YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25296097, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNMMRTAMLL AFMTALFMGV GFLIGGKGGM MIALLIAAGM NLFSYWNSDK MVLSAYRARE  60
   61 IDEANAPEFF HMIRDLSQNA GLPMPKVYIY DSPQPNAFAT GRNPENAAVA ASTGLLERLT 120
  121 PEEVAGVMAH ELAHVQNRDT LTMTITATLA GAISMLGNFA FFFGGNRENN NNPLGFIGVL 180
  181 VAMIVAPLAA MLVQMAISRT REYSADRRGA EICGNPLWLA SALQKISGMA QQIHNDDAER 240
  241 NPATAHMFII NPLSGERMDN LFSTHPNTEN RVAALHAMAQ EFSPRASTPP PSGDRPVRKS 300
  301 GSVPTTGWRR GNENERKGPW S

Type	Start	End	Confidence
Cytoplasmic	1	6	0.84
Transmembrane Helix	7	25	0.92
Non-Cytoplasmic	26	29	0.70
Transmembrane Helix	30	48	0.86
Cytoplasmic	49	140	0.93
Transmembrane Helix	141	163	0.90
Non-Cytoplasmic	164	173	0.83
Transmembrane Helix	174	197	0.90
Cytoplasmic	198	321	0.93