YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HOFC_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASKQLWRWH GITGDGNAQD GMLWAESRTL LLMALQQQMV TPLSLKRIAI NSAQWRGDKS  60
   61 AEVIHQLATL LKAGLTLSEG LALLAEQHPS KQWQALLQSL AHDLEQGIAF SNALLPWSEV 120
  121 FPPLYQAMIR TGELTGKLDE CCFELARQQK AQRQLTDKVK SALRYPIIIL AMAIMVVVAM 180
  181 LHFVLPEFAA IYKTFNTPLP ALTQGIMTLA DFSGEWSWLL VLFGFLLAIA NKLLMRRPTW 240
  241 LIVRQKLLLR IPIMGSLMRG QKLTQIFTIL ALTQSAGITF LQGVESVRET MRCPYWVQLL 300
  301 TQIQHDISNG QPIWLALKNT GEFSPLCLQL VRTGEASGSL DLMLDNLAHH HRENTMALAD 360
  361 NLAALLEPAL LIITGGIIGT LVVAMYLPIF HLGDAMSGMG

Type	Start	End	Confidence
Cytoplasmic	1	162	0.98
Transmembrane Helix	163	185	0.90
Non-Cytoplasmic	186	215	0.90
Transmembrane Helix	216	235	0.93
Cytoplasmic	236	368	0.70
Transmembrane Helix	369	390	0.92
Non-Cytoplasmic	391	400	0.61