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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: HMDH_XENLA
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.60
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSRLFRMHG QFVASHPWEV IVGTVTLTIC MMSMNMFTGN DKICGWNYAC PKFEEDVLSS  60
   61 DIIILTITRC IAILYIYFQF QNLRQLGSKY ILGIAGLFTI FSSFVFSTVV IHFLDKELTG 120
  121 LNEALPFFLL LIDLSKASAL AKFALSSNSQ DEVRDNIARG MAILGPTFTL EALVECLVIG 180
  181 VGTMSGVRQL EIMCCFGCMS VLANYFAFMT FFPACVSLVL ELSRESREGR PIWQLSQFAS 240
  241 VLEEEEDNKP NPVTQRVKMI MSLGLVLVHA HSRWISEPSS QNSTSISDHE VTTMLDDMMP 300
  301 KRVEPSMPLW QFYLSRMVTM DVEQIITLGL ALLLAVKYIF FEQTETESTF SMKNPIISPV 360
  361 AVQKKQIESC CRREPEQEKT VHVSTTEEAS SKEETEAVIK PLPLETSPKA KFIVGDSSPL 420
  421 ELSPEDKNTM FDLPEEPRPL DECVRILKNP DKGAQYLTDA EVISLVNAKH IPAYKLETMM 480
  481 ESPREGVAIR RQMLSDKLPQ RSALQSLPYK NYNYSLVMGA CCENVIGYMP IPVGVAGPLL 540
  541 LNNKEYQVPM ATTEGCLVAS TNRGCRAIML GGGAKSRVLA DGMTRGPVVR LPTACDAAEV 600
  601 KAWLDSAEGF KVIKDAFDST SRFARLGRLQ NCVAGRNLYI RFQSKTGDAM GMNMISKVTE 660
  661 QALARLQEEF PDLHVLAVSG NYCTDKKPAA INWIEGRGKS VVCEAIIPAK VVREVLKSST 720
  721 EALVEVNINK NFIGSAMAGS IGGYNAHAAN IVTAIYIACG QDAAQNVGSS NCITIMEATG 780
  781 PTYEDLYISC TMPSIEIGTV GGGTNLAPQQ ACLQMLGVQG ASTETPGKNA CQLAQIVCST 840
  841 VMAGELSLMA ALAAGHLVKS HMVHNRSKIN LQDLPGTCTK KAA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle