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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: HMDH3_SOLTU
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.92
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVRRRPVKP LYPSEHISSG EPLKPHNQDS SVKASDALPL PLYLTNGLFF TMFFSVMYFL  60
   61 LHRWREKIRN GIPLHVLNFS ELVAMVSLIA SVIYLLGFFG IGFVQSFVSK GNNDSWDVED 120
  121 ESPEQFIDRT VTPPPVRRNI PMKSVPVAEK TAQIITPFSS EDDEVVIKSV VEGRIPSYSL 180
  181 ESKLGDCKRA AFIRKEALQR SSGKSLEGLP LDGFDYESIL GQCCEMPIGY IQIPVGIAGP 240
  241 LLLNGKEFSV PMATTEGCLV ASTNRGCKAI YVSGGATSVL FRDAMTRAPV VRFGSAKRAA 300
  301 ELKFFVEDPM NFETLSVVFN KSSRFARLQN IQCAIAGKNL YMRFSCSTGD AMGMNMVSKG 360
  361 VQNVLDYLQN EYPDMDIIGI SGNYCSDKKP AAVNWIEGRG KSVVCEAIIK EDVVKKVLKT 420
  421 EVATLVELNM LKNLTGSAMA GALGGFNAHA SNIVSAVYLA TGQDPAQNIE SSHCITMMEA 480
  481 VNDGKDLHIS VTMPSIEVGT VGGGTQLASQ SACLNLLGVK GANREAPGSN ARLLATIVAG 540
  541 SVLAGELSLM SAISAGQLVK SHMKYNRSCK DVTK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle