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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: HMDH2_CAPAN
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.89
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVRRRSEEA VYSSKVFAAD EKPLKPHKQQ QEEDNTLLID ASDALPLPLY FTNGLFFTMF  60
   61 FSVMYFLLSR WREKIRNSTP LHVVTLSELG AIVSLIASVI YLLGFFGIGF VQTFVARGNN 120
  121 DSWDEEDEND EQFILEEDSR RGPCAAATTL GCAVPTPPAK HIAPIVPQQP AVSIAEKPAP 180
  181 LVTPAASEED EEIIKSVVQG KIPSYSLESK LGDCKRAASI RKEVLQRITG KSLEGLPLDG 240
  241 FNYESILGQC CEMTIGYVQI PVGIAGPLLL NGREYSVPMA TTEGCLVAST NRGCKAIYAS 300
  301 GGATSILLRD GMTRAPCVRF GTAKRAAELK FFVEDPINFE TLANVFNQSS RFARLQRIQC 360
  361 AIAGKNLHMR FVCSTGDAMG MNMVSKGVQN VLDYLQNEYA DMDVIGISAN FCSDKKPAAV 420
  421 NWIEGRGKSV VCEAIITEEV VKKVLKTEVA ALVELNMLKN LTGSALAGAL GGFNAHASNI 480
  481 VSAVYIATGQ DPAQNIESSH CITMMEAVND GKDLHISVTM PSIEVGTVGG GTQLASQSAC 540
  541 LNLLGVKGAN REAPGSNARL LATIVAGSVL AGELSLMSAI SAGQLVNSHM KYNRSTKDVT 600
  601 KASS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle