YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HISQ_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLYGFSGVIL QGALVTLELA ISSVVLAVII GLIGAGGKLS QNRLSGLIFE GYTTLIRGVP  60
   61 DLVLMLLIFY GLQIALNTVT EAMGVGQIDI DPMVAGIITL GFIYGAYFTE TFRGAFMAVP 120
  121 KGHIEAATAF GFTRGQVFRR IMFPSMMRYA LPGIGNNWQV ILKSTALVSL LGLEDVVKAT 180
  181 QLAGKSTWEP FYFAIVCGVI YLVFTTVSNG VLLFLERRYS VGVKRADL

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.76
Transmembrane Helix	14	37	0.87
Cytoplasmic	38	53	0.77
Transmembrane Helix	54	76	0.84
Non-Cytoplasmic	77	89	0.73
Transmembrane Helix	90	108	0.88
Cytoplasmic	109	148	0.66
Transmembrane Helix	149	167	0.56
Non-Cytoplasmic	168	190	0.79
Transmembrane Helix	191	215	0.91
Cytoplasmic	216	228	0.89