YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30261263, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKKKIGLLV MAYGTPDSLD EVEAYYTHIR HGRKPSEEAL QDLIGRYKAI GGISPLAKIT  60
   61 KEQAHKLTDS MNNMFTEYEF NCYLGLKHTA PFIEDAVEEM KRDGIEQAIS IVLAPHYSTF 120
  121 SIKAYNERAI RLSEEIGGPV IKPIDQWYDE PKFISYWADQ IKETFTKIED KEKAVVIFSA 180
  181 HSLPEKIIAA GDPYVEQLQH TADLIAAAAN IQNYTIGWQS AGNTPDPWIG PDVQDLTRDL 240
  241 FEEYRYESFI YCPVGFVAEH LEVLYDNDYE CKVVTDELNA AYFRPNMPNA QSTFIDCLAT 300
  301 IVSRKMKEIV DKELILNNN

Type	Start	End	Confidence
Signal Peptide	1	18	0.63
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	319	0.99