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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: HD_RAT
Protein type: Transmembrane
Type Confidence: 0.97
Topology Confidence: 0.82
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAFESLKSF QQQQQQQQPP PQPPPPPPPP PQPPQPPPQG QPPPPPPLPG PAEEPLHRPK  60
   61 KELSATKKDR VNHCLTICEN IVAQSLRNSP EFQKLLGIAM ELFLLCSDDA SRRRMVADEC 120
  121 LNKVIKALMD SNLPRLQLEL YKEIKKNGAP RSLRAALWRF AELAHLVRPQ KCRPYLVNLL 180
  181 PCLTRTSKRP EESVQETLAA AVPKIMASFG NFANDNEIKV LLKAFIANLK SSSPTVRRTA 240
  241 AGSAVSICQH SRRTQYFYNW LLNVLLGLLV PMEEDHPTLL ILGVLLTLRC LVPLLQQQVK 300
  301 DTSLKGSFGV TRKEMEVSPS AEQLVQVYEL TLHHTQHQDH NVVTGALELL QQLFRTPPPE 360
  361 LLQALTTPGG LGQLTLVREE AGGRGRSGSI VELLAGGGSS CSPVLSRKQK GKVLLGEEEA 420
  421 LEDDSESRSD VSSSAFAASV KSEIGGELAA SSSGVSTPGS VGHDIITEQP RSQHTLQADS 480
  481 VDLSGCDLTS AATDGDEEDI LSHSSSQFSA VPSDPAMDLN DGTQASSPIS DSSQTTTEGP 540
  541 DSAVTPSDSS EIVLDGADSQ YLGVQIGQPQ EEDREAAGVL SGEVSDVFRN SSLALQQAHL 600
  601 LERMGHSRQP SDSSVDKFVS KDEVAEAGDP ESKPCRIKGD IGQPNDDDSA PLVHCVRLLS 660
  661 ASFLLTGEKK ALVPDRDVRV SVKALALSCI GAAVALHPES FFSKLYKVPL STMESTEEQY 720
  721 VSDILNYIDH GDPQVRGATA ILCGTLVYSI LSRSRLRVGD WLGTIRALTG NTFSLVDCIP 780
  781 LLQKTLKDES SVTCKLACTA VRHCVLSLCS SSYSDLGLQL LIDMLPLKNS SYWLVRTELL 840
  841 ETLAEIDFRL VSFLEAKAES LHRGPHHYTG FLKLQERVLN NVVIYLLGDE DPRVRHVAAT 900
  901 TLTRLVPKLF YKCDQGQADP VEAVARDQSS VYLKLLMHET QPPSHFSVST ITRIYRGYSL 960
  961 LPSVTDVTME NNLSRVVAAV SHELITSTTR ALTFGCCEAL CVLSAAFPVC TWSLGWHCGV1020
 1021 PPLSASDESR KSCTVGMASM ILTLLSSAWF PLDLSAIQDA LILAGNLLAA SAPKSLRSSW1080
 1081 ASEEEGSSAA TRQEEIWPAL GDRTLVPMVE QLFSHLLKVI NICAHVLDDE TPGPAIKAAL1140
 1141 PSLTNPPSLS PIRRKGKEKE PGEQTSTPMS PKKGGEASTA SRQSDTSGPV TASKSSSLGS1200
 1201 FYHLPSYLRL HDVLKATHAN YKVTLDLQNS TEKFGGFLRS ALDVLSQILE LATLQDIGKC1260
 1261 VEEVLGYLKS CFSREPMMAT VCVQQLLKTL FGTNLASQFD GLSSNPSKSQ CRAQRLGSSS1320
 1321 VRPGLYHYCF MAPYTHFTQA LADASLRNMV QADQEHDASG WFDVLQKVSA QLKTNLTSVT1380
 1381 KNRADKNAIH NHIRLFEPLV IKALKQYTTT TSVQLQKQVL DLLAQLVQLR VNYCLLDSDQ1440
 1441 VFIGFVLKQF EYIEVGQFRE SEAIIPNIFF FLVLLSYERY HSKQIIGIPK IIQLCDGIMA1500
 1501 SGRKAVTHAI PALQPIVHDL FVLRGTNKAD AGKELETQKE VVVSMLLRLI QYHQVLEMFI1560
 1561 LVLQQCHKEN EDKWKRLSRQ VADIILPMLA KQQMHIDSHE ALGVLNTLFE ILAPSSLRPV1620
 1621 DMLLRSMFIT PSTMASVSTV QLWISGILAI LRVLISQSTE DIVLSRIQEL SFSPYLISCP1680
 1681 VINRLRDGDS NPTLGERSRG KQVKNLPEDT FSRFLLQLVG ILLEDIVTKQ LKVDMSEQQH1740
 1741 TFYCQELGTL LMCLIHIFKS GMFRRITAAA TRLFTSDGCE GSFYTLDSLN ARVRAMVPTH1800
 1801 PALVLLWCQI LLLINHTDHR WWAEVQQTPK RHSLSCTKSL NPQISAEEDS GSAAQLGMCN1860
 1861 REIVRRGALI LFCDYVCQNL HDSEHLTWLI VNHIQDLISL SHEPPVQDFI SAIHRNSAAS1920
 1921 GLFIQAIQSR CENLSTPTTL KKTLQCLEGI HLSQSGAVLT LYVDRLLGTP FRALARMVDT1980
 1981 LACRRVEMLL AANLQSSMAQ LPEEELNRIQ EHLQNTGLAQ RHQRLYSLLD RFRLSTVQDS2040
 2041 LSPLPPVTSH PLDGDGHTSL ETVNPDKDWY LQLVRSQCWT RSDSALLEGA ELVNRIPAED2100
 2101 MSDFMMSSEF NLSLFAPCLS LGMSEIAGSQ KSPLFEAARR VTLDRVTNVV QQLPAVHQVF2160
 2161 QPFLPTEPTA YWSKLNDLFG DTTSYQSLTT LARALAQYLV VLSKVPAPLH LPPEKEGHTV2220
 2221 KFVVMTLEAL SWHLIHEQIP LSLDLQAGLD CCCLALQVPG LWGVLSSPEY VTHTCSLIHC2280
 2281 VRFILEAIAV QPGDQLLGPE SRSHTPRAVR KEEVDSDIQN LSHITSACEM VADMVESLQS2340
 2341 VLALGHKRNS TLPSFLTAVL KNIVVSLARL PLVNSYTRVP PLVWKLGWSP KPGGDFGTVF2400
 2401 PEIPVEFLQE KEVLKEFIYR INTLGWTSRT QFEETWATLL GVLVTQPLVM EQEESPPEED2460
 2461 TERTQIHVLA VQAITSLVLS AMAVPVAGNP AVSCLEQQPR NKPLKALDTR FGRKLSMIRG2520
 2521 IVEQEIQEMV SQRENTATHH SHQAWDPVPS LLPATTGALI SHDKLLLQIN SEREPGNMSY2580
 2581 KLGQVSIHSV WLGNNITPLR EEEWDEEEEE EADAPAPTSP PVSPVNSRKH RAGVDIHSCS2640
 2641 QFLLELYSRW ILPSSAARRT PVILISEVVR SLLVVSDLFT DVPQFEMMYL TLTELRRVHP2700
 2701 SEDEILIQYL VPATCKAAAV LGMDKTVAEP VSRLLESTLR STHLPSQIGA LHGILYVLEC2760
 2761 DLLDDTVKQL IPVVSDYLLS NLKGIAHCVN IHSQQHVLVM CATAFYLMEN YPLDVGPEFS2820
 2821 ASVIQMCGVM LSGSEESTPS VIYHCALRGL ERLLLSEQLS RLDTESLVKL SVDRVNVQSP2880
 2881 HRAMAALGLM LTCMYTGKEK ASPGRASDPS PATPDSESVI VAMERVSVLF DRIRKGFPCE2940
 2941 ARVVARILPQ FLDDFFPPQD VMNKVIGEFL SNQQPYPQFM ATVVYKVFQT LHSAGQSSMV3000
 3001 RDWVMLSLSN FTQRTPVAMA MWSLSCFLVS ASTSPWVSAI LPHVISRMGK LEQVDVNLFC3060
 3061 LVATDFYRHQ IEEEFDRRAF QSVFEVVAAP GSPYHRLLAC LQNVHKVTAC 

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