YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HDED_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLYIDKATIL KFDLEMLKKH RRAIQFIAVL LFIVGLLCIS FPFVSGDILS TVVGALLICS  60
   61 GIALIVGLFS NRSHNFWPVL SGFLVAVAYL LIGYFFIRAP ELGIFAIAAF IAGLFCVAGV 120
  121 IRLMSWYRQR SMKGSWLQLV IGVLDIVIAW IFLGATPMVS VTLVSTLVGI ELIFSAASLF 180
  181 SFASLFVKQQ

Type	Start	End	Confidence
Cytoplasmic	1	22	0.96
Transmembrane Helix	23	43	0.93
Non-Cytoplasmic	44	48	0.76
Transmembrane Helix	49	69	0.93
Cytoplasmic	70	75	0.87
Transmembrane Helix	76	97	0.93
Non-Cytoplasmic	98	103	0.83
Transmembrane Helix	104	126	0.92
Cytoplasmic	127	134	0.93
Transmembrane Helix	135	155	0.93
Non-Cytoplasmic	156	162	0.74
Transmembrane Helix	163	187	0.86
Cytoplasmic	188	190	0.94