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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: HCN4_RABIT
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.56
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKLPPSMRK RLYSLPQQVG AKAWIMDEEE DAEEEGAGGR QDPRRRSIRL RPLPSPSPSP  60
   61 SAAAAAAGGA ESRGAALGGA ADGEGPARGA AKSSTNGDCR RFRGSLASLG SRGGGGGGGS 120
  121 TGGGSHGHLH DSAEERRLIA EGDASPGEDR TPPGLAAEPE RPGAPAPPAA SPPQVPSSCG 180
  181 EQRPADAAVK VEGGAAAGDQ ILPEAEARLG QAGFMQRQFG AMLQPGVNKF SLRMFGSQKA 240
  241 VEREQERVKS AGFWIIHPYS DFRFYWDLTM LLLMVGNLII IPVGITFFKD ENTTPWIVFN 300
  301 VVSDTFFLID LVLNFRTGIV VEDNTDIILD PRRIKMKYLK SWFVVDFVSS IPVDYIFLIV 360
  361 ETRIDSEVYK TARALRIVRF TKILSLLRLL RLSRLIRYIH QWEEIFHMTY DLASAVVRIV 420
  421 NLIGMMLLLC HWDGCLQFLV PMLQDFPDDC WVSLNNMVNN SWGKQYSYAL FKAMSHMLCI 480
  481 GYGRQAPMGM SDVWLTMLSM IVGATCYAMF IGHATALIQS LDSSRRQYQE KYKQVEQYMS 540
  541 FHKLPPDTRQ RIHDYYEHRY QGKMFDEESI LGELSEPLRE EIINFNCRKL VASMPLFANA 600
  601 DPNFVTSMLT KLRFEVFQPG DYIIREGTIG KKMYFIQHGV VSVLTKGNKE TKLADGSYFG 660
  661 EICLLTRGRR TASVRADTYC RLYSLSVDNF NEVLEEYPMM RRAFETVALD RLDRIGKKNS 720
  721 ILLHKVQHDL SSGVSNYQEN AIVQRIVQHD REMAHCARRA QATTPVAPAI WTPLIQAPLQ 780
  781 AAAATTSVAI ALTHHPRLPA AIFRPPPGPT TLGSLGAGQT PRHLRRLQSL APSAPSPASP 840
  841 ASSPSQPDTP SSASLHVQPL PGCSTPAGLG SLLPTAGSPP APTPPTTAGA AGFSHFHRAL 900
  901 GGSLSSSDSP LLTPMQSAAR SPQQPPPPPG APAGLGLLEH FLPPPARSPT SSPGQLGQPP 960
  961 GELSPGLGSG PPGTPETPPR QPERLPFAAG ASAGASPVAF SPRGGPSPPG HSPGTPRTFP1020
 1021 SAPPRASGSH GSLLLPPASS PPPPPPPPAP QRRATPPLAP GRLSQDLKLI SASQPALPQD1080
 1081 GAQTLRRASP HSSSGESVAA LPPFPRAPGR PPGAGPGQHV TLTLPRKASS GSLPPPLSLF1140
 1141 GPRAAPAGGP RLTAAPQREP GAKSEPVRSK LPSNL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle