YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HCAT_ECOLI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	8	0.93
Transmembrane Helix	9	31	0.88
Non-Cytoplasmic	32	39	0.77
Transmembrane Helix	40	60	0.91
Cytoplasmic	61	69	0.89
Transmembrane Helix	70	91	0.89
Non-Cytoplasmic	92	95	0.64
Transmembrane Helix	96	118	0.84
Cytoplasmic	119	131	0.84
Transmembrane Helix	132	151	0.92
Non-Cytoplasmic	152	157	0.79
Transmembrane Helix	158	178	0.93
Cytoplasmic	179	203	0.92
Transmembrane Helix	204	224	0.89
Non-Cytoplasmic	225	236	0.70
Transmembrane Helix	237	257	0.90
Cytoplasmic	258	268	0.74
Transmembrane Helix	269	284	0.97
Non-Cytoplasmic	285	292	0.54
Transmembrane Helix	293	316	0.85
Cytoplasmic	317	325	0.91
Transmembrane Helix	326	348	0.90
Non-Cytoplasmic	349	354	0.69
Transmembrane Helix	355	373	0.90
Cytoplasmic	374	379	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLQSTRWLA LGYFTYFFSY GIFLPFWSVW LKGIGLTPET IGLLLGAGLV ARFLGSLLIA  60
   61 PRVSDPSRLI SALRVLALLT LLFAVAFWAG AHVAWLMLVM IGFNLFFSPL VPLTDALANT 120
  121 WQKQFPLDYG KVRLWGSVAF VIGSALTGKL VTMFDYRVIL ALLTLGVASM LLGFLIRPTI 180
  181 QPQGASRQQE STGWSAWLAL VRQNWRFLAC VCLLQGAHAA YYGFSAIYWQ AAGYSASAVG 240
  241 YLWSLGVVAE VIIFALSNKL FRRCSARDML LISAICGVVR WGIMGATTAL PWLIVVQILH 300
  301 CGTFTVCHLA AMRYIAARQG SEVIRLQAVY SAVAMGGSIA IMTVFAGFLY QYLGHGVFWV 360
  361 MALVALPAMF LRPKVVPSC