YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HB2B_RAT
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.95
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALQTPSFLL PAAVVVLMVL SSPGTEGRDS PRDFVYQFKG LCYYTNGTQR IRDVIRYIYN  60
   61 QEEYLRYDSD VGEYRALTEL GRPSAEYFNK QYLEQTRAEL DTVCRHNYEG SEVRTSLRRL 120
  121 EQPNVAISLS RTEALNHHNL LVCSVTDFYP AQIKVRWFRN GQEETAGVVS TQLIRNGDWT 180
  181 FQILVMLEMT PQRGEVYICH VDHPSLESPV TVEWRAQSES AQSKMLSGIG GFVLGVIFLG 240
  241 LGLFIRHKRQ KGPRGPPPAG LLQ

Type	Start	End	Confidence
Signal Peptide	1	27	0.97
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	224	0.99
Transmembrane Helix	225	245	0.95
Cytoplasmic	246	263	0.97